PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0587.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 503aa    MW: 55455.6 Da    PI: 4.5269
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0587.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.9e-36381282101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y++++d++++ ++sws+ +nsfvv+++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  Kaladp0053s0587.4.p  38 FLCKTYDMVDDPSTDAVVSWSSGNNSFVVWNPPEFGRDLLPKYFKHNNFSSFVRQLNTYGFRKVHPDR---------WEFANEGFLRGQK 118
                          9****************************************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++ikr+k
  Kaladp0053s0587.4.p 119 HLLKTIKRRK 128
                          ********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.85E-3633127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-3934127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-6334127IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSSSAERGIS GTCSTDSTQS VPVPVPVTMP NPNAPPPFLC KTYDMVDDPS TDAVVSWSSG  60
NNSFVVWNPP EFGRDLLPKY FKHNNFSSFV RQLNTYGFRK VHPDRWEFAN EGFLRGQKHL  120
LKTIKRRKAF HGPVQSQLEQ SQVQSPAASP CVEVGKFGLE EEVEMLKRDK NVLMQELVKL  180
RQQQQSTDKQ LQVTMDRLQG MEQRQQQLMS FLAKAVQSPG FLTQFVQQQA QNNRRISEAN  240
KKRRLKQDDD SMGDPSSNPG GQIVKYQPFL NEASTAFLRQ LMEVDSSSQL EFRNNDQDNF  300
FFGDASSSSD GQHGGSSMDR ASKPPLLEVL ASSPQFCSPP ASMAPACGSS ADSVDLQNSS  360
IGASSEVGTI IHHQPISSGK QDISRDIQYE AVPLVPDMVP ESFAENPVDD SIQFDASTFG  420
LDTELPFNIE SISPGHGTTD MSAYDDVWKM LSEEIDSAQL GGMANESEML LMDDDLDSSQ  480
NIDHLTDQMG LLSSGAKKND NI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-272912711120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126LKTIKRR
2239246NKKRRLKQ
3240245KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018512.11e-169PREDICTED: heat stress transcription factor A-1d isoform X1
SwissprotQ84T611e-135HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLQ564C81e-165Q564C8_SOYBN; Heat shock factor protein hsf8-related
STRINGGLYMA16G13400.11e-165(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-115heat shock transcription factor A1D